In a 2-cup liquid measure, dissolve yeast and 1 teaspoon sugar in warm water. Let stand until foamy, about 5 minutes.
Insert medium shredding disc and shred cheese. Leave in work bowl. Remove shredding disc and insert dough blade. Add bread flour, rye flour, sugar and salt; process to combine, about 20 seconds.
Add vegetable oil and beer to yeast mixture. With machine running on dough speed, add liquid mixture through small feed tube in a steady stream only as fast as flour will absorb it.
Once dough forms a ball, continue processing for 30 seconds to knead dough. Open lid to check dough consistency. If dough is stiff and somewhat dry, add 1 teaspoon water; if soft and sticky, add 1 tablespoon flour. Close lid and process for 10 seconds. Check dough consistency again, making additional adjustments if necessary. Add jalapeno peppers, process an additional 15 seconds.